Characterization of protein groups identified from AP-MS data using MaxQuant

A dataset containing the characterization of protein groups identified using MaxQuant from AP-MS samples. Samples correspond to pull-down experiments performed on Cd4+ T cells from CBL-OST mice (expressing a tagged version of the bait protein Cbl) and WT mice (expressing the endogeneous Cbl protein). Cd4+ T cells from CBL-OST and WT backgrounds were stimulated by cross-linking of Cd3e and Cd4 for different times (0, 30, 120, 300 and 600 seconds). Samples were then lysed and subjected to MS-MS analysis. Experiments were conducted in three biological replicates (S1, S2 and S3). Sample were analysed by MS-MS in three technical replicates (R1, R2 and R3).

proteinGroups_Cbl

Format

A data frame with 1540 rows (protein groups) and 358 variables:

See the Maxquant documentation for the description of the different variables