Plot protein enrichement fold-change versus p-value

Plot protein enrichement fold-change versus p-value

plot_volcanos(res, labels = NULL, N_print = 15, conditions = NULL,
  p_val_thresh = 0.05, fold_change_thresh = 2, x0 = NULL, c = NULL,
  save_file = NULL, xlim = NULL, ylim = NULL,
  asinh_transform = TRUE, norm = FALSE)

Arguments

res	an InteRactome
labels	labels for proteins in plot. Must the same length as res$names
N_print	maximum of protein labels to display
conditions	conditions to plot
p_val_thresh	threshold on p-value to display
fold_change_thresh	threshold on fold-change to display
x0	parameters x0 of the line dividing the volcano plot according to f(x) = c / (|x|-x0). Ignored unless parameters p_val_thresh and fold_change_thresh are set to NULL
c	parameters c of the line dividing the volcano plot according to f(x) = c / (|x|-x0). Ignored unless parameters p_val_thresh and fold_change_thresh are set to NULL
save_file	path of output file (.pdf)
xlim	range of x values
ylim	range of y values
asinh_transform	logical, display asinh(log10(p-value)) on the y-axis
norm	Use normalized fold-changes

Value

a plot