Plot indirect interactions

Source: R/Plotting_functions.R

Plot indirect interactions

plot_indirect_interactions(score,
  var_threshold = "max_delta_stoichio_log", threshold = 1,
  min_range = NULL, save_dir = NULL, plot_width = 2,
  plot_height = 2, show_legend = FALSE)

Arguments

score

output of the identify_indirect_interactions() function
var_threshold

Variable of score on which the threshold will be applied
threshold

maximum difference between observed and predicted stoichiometries (in log10)
min_range

Minimum range (in log10 scale) displayed on the y-axis (centered on the mean)
save_dir

path to the directory where the plot will be saved
plot_width

set plot width
plot_height

set plot height
show_legend

logical, shows plot legend