Order proteins within an InteRactome

Source: R/Main_functions.R

Order proteins within an InteRactome

order_interactome(res, idx = NULL, var_min_p_val = "min_p_val",
  p_val_breaks = c(1, 0.1, 0.05, 0.01), var_order = "max_stoichio",
  bait_first = TRUE)

Arguments

res

an InteRactome
idx

indices used to order proteins. Overrides ordering using var_p_val, p_val_breaks and var_order
var_min_p_val

name of the p-value variable
p_val_breaks

numeric vector to discretize p-value
var_order

Variable used to order interactors for each p-value
bait_first

logical, puts bait in first position

Value

an InteRactome