R/Main_functions.R
filter_Proteins.Rd
Filtering of a data frame using a threshold on protein identification score and gene names
filter_Proteins(df, min_score = 0, filter_gene_name = TRUE, Column_ID = "Protein.IDs", Column_gene_name = "Gene.names", Column_score = "Score", split_param = ";")
df | A data frame |
---|---|
min_score | Threshold for protein identification score |
filter_gene_name | logical, filter out proteins withy empty gene name |
Column_ID | Column with protein IDs |
Column_gene_name | The name of df's column containing gene names |
Column_score | The name of df's column containing protein identification score |
split_param | Character used to split gene names into substrings. |
A filtered data frame. Contains an extra column with the first substring of the column Column_gene_name