Compute correlation in protein recruitment from interaction stoichiometries computed across all conditions for each biological replicate. Pearson correlations are used.
compute_correlations(res, idx = NULL, log = FALSE, nmax = NULL, strict = TRUE, Rmin = 0)
res | an |
---|---|
idx | indexes of the set of proteins for which correlations will be computed |
log | logical, use log-transformed stoichiometries |
nmax | integer, limits the number of edges per node |
strict | logical, if TRUE, ensures a strict upper bound on the maximal degree |
Rmin | minimum absolute value of the Pearson R coefficient |
a data.frame with protein correlation information (correlation coefficient in column 'r_corr' and associated p-value in column 'p-corr')